SMTL ID : 4l7w.1

Crystal structure mutant H77A of human HD domain-containing protein 2, Genomics Consortium (NESG) Target HR6723

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

homo-dimer

Ligands

10 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: E.81, D.86 Ligands: MG.2, MG.3, MG.4, MG.5 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.81, A:D.86 MG.2: 6 residues within 4Å: Chain A: R.32, D.86 Ligands: MG.1, MG.3, MG.4, MG.5 No protein-ligand interaction detected (PLIP) MG.3: 7 residues within 4Å: Chain A: R.32, D.78, E.81, D.86 Ligands: MG.1, MG.2, MG.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.78, A:E.81, A:E.81 MG.4: 7 residues within 4Å: Chain A: E.81, D.86, I.87, K.98 Ligands: MG.1, MG.2, MG.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.81, A:D.86, A:I.87 MG.5: 6 residues within 4Å: Chain A: D.78, E.81 Ligands: MG.1, MG.2, MG.3, MG.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.78, A:E.81, H2O.2 MG.6: 6 residues within 4Å: Chain B: E.81, D.86 Ligands: MG.7, MG.8, MG.9, MG.10 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.81, B:D.86 MG.7: 6 residues within 4Å: Chain B: R.32, D.86 Ligands: MG.6, MG.8, MG.9, MG.10 No protein-ligand interaction detected (PLIP) MG.8: 7 residues within 4Å: Chain B: R.32, D.78, E.81, D.86 Ligands: MG.6, MG.7, MG.10 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.78, B:E.81, B:E.81 MG.9: 7 residues within 4Å: Chain B: E.81, D.86, I.87, K.98 Ligands: MG.6, MG.7, MG.10 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.81, B:D.86, B:I.87 MG.10: 6 residues within 4Å: Chain B: D.78, E.81 Ligands: MG.6, MG.7, MG.8, MG.9 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.78, B:E.81, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuzin, A. et al., Northeast Structural Genomics Consortium Target HR6723. To be Published

Release Date

2013-07-03

Peptides

HD domain-containing protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

HD domain-containing protein 2