SMTL ID : 4l8j.1

Crystal structure of a Putative efflux transporter (BACEGG_01895) from Bacteroides eggerthii DSM 20697 at 2.06 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-dimer

Ligands

6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: L.22, K.23, D.24, R.242 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.24, A:D.24, A:D.24 PEG.2: 2 residues within 4Å: Chain A: Q.98, S.101 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.98 PEG.3: 7 residues within 4Å: Chain A: V.263, G.265, Y.316 Chain B: V.263, G.265, Y.316 Ligands: PEG.8 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:G.265, B:G.265 PEG.6: 4 residues within 4Å: Chain B: L.22, K.23, D.24, R.242 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.24, B:D.24 PEG.7: 2 residues within 4Å: Chain B: Q.98, S.101 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.98 PEG.8: 7 residues within 4Å: Chain A: V.263, G.265, Y.316 Chain B: V.263, G.265, Y.316 Ligands: PEG.3 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:G.265, B:G.265

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: Y.81, K.116, Y.119, E.120, T.123 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.116, A:T.123 GOL.5: 3 residues within 4Å: Chain A: R.142, E.145, N.146 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.142, A:R.142, A:E.145, A:N.146, A:N.146 Water bridges: A:E.145 GOL.9: 5 residues within 4Å: Chain B: Y.81, K.116, Y.119, E.120, T.123 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.116, B:T.123, B:T.123 GOL.10: 3 residues within 4Å: Chain B: R.142, E.145, N.146 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.142, B:R.142, B:E.145, B:N.146, B:N.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a Putative efflux transporter (BACEGG_01895) from Bacteroides eggerthii DSM 20697 at 2.06 A resolution. To be published

Release Date

2013-07-03

Peptides

Putative efflux transporter: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative efflux transporter