SMTL ID : 4l98.1

Crystal structure of the complex of F360L PPARgamma mutant with the ligand LT175

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-dimer

Ligands

2 x LRG: (2S)-2-(biphenyl-4-yloxy)-3-phenylpropanoic acid(Non-covalent)

LRG.1: 16 residues within 4Å: Chain A: F.80, Q.81, C.83, Q.84, S.87, H.121, I.124, Y.125, H.247, L.251, L.263, H.264, P.265, Q.268 Chain B: Y.271, Y.275 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.80, A:Q.84, A:I.124, A:Y.125, A:L.251, A:P.265 Hydrogen bonds: A:S.87, A:S.87, A:Q.268, B:Y.275 Salt bridges: A:H.121, A:H.247 LRG.2: 17 residues within 4Å: Chain A: Y.271, Y.275 Chain B: F.80, Q.81, C.83, Q.84, R.86, S.87, H.121, Y.125, F.161, H.247, L.251, L.263, H.264, P.265, Q.268 15 PLIP interactions: 14 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.80, B:F.80, B:F.80, B:Q.84, B:R.86, B:Y.125, B:F.161, B:L.251, B:P.265 Hydrogen bonds: B:S.87, B:S.87, B:Q.268, A:Y.271 Salt bridges: B:H.121, B:H.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lori, C. et al., Structural basis of the transactivation deficiency of the human PPAR gamma F360L mutant associated with familial partial lipodystrophy. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-06-25

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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