SMTL ID : 4la3.1 (1 other biounit)

Crystal structure of dimethylsulphoniopropionate (DMSP) lyase DddQ Y131A in complex with DMSP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.123, H.125, E.129, H.163 Ligands: DQY.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.125, A:E.129, A:E.129, A:H.163

1 x DQY: 3-(dimethyl-lambda~4~-sulfanyl)propanoic acid(Non-covalent)

DQY.2: 9 residues within 4Å: Chain A: Y.92, Y.110, Y.120, H.123, H.125, E.129, H.163, P.187 Ligands: ZN.1 5 PLIP interactions: 5 interactions with chain A Salt bridges: A:H.123, A:H.125, A:H.163 pi-Cation interactions: A:Y.92, A:Y.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, C. et al., Molecular insight into bacterial cleavage of oceanic dimethylsulfoniopropionate into dimethyl sulfide. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-01-15

Peptides

Dimethylsulphoniopropionate (DMSP) lyase DddQ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dimethylsulphoniopropionate (DMSP) lyase DddQ

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