SMTL ID : 4laf.1

Crystal structure of PnpB complex with FMN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-tetramer

Ligands

4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 17 residues within 4Å: Chain A: S.11, S.12, Y.13, G.14, H.15, I.16, P.83, T.84, R.85, F.86, S.119, T.120, A.121, S.122, G.125 Chain C: D.98, H.140 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:S.12, A:Y.13, A:G.14, A:H.15, A:I.16, A:T.84, A:R.85, A:F.86, A:S.119, A:S.119, A:A.121, A:S.122, C:H.140 Salt bridges: A:H.15 pi-Stacking: A:F.86 FMN.2: 18 residues within 4Å: Chain B: S.11, S.12, Y.13, G.14, H.15, I.16, P.83, T.84, R.85, F.86, S.119, T.120, A.121, S.122, G.125, A.173 Chain D: D.98, H.140 16 PLIP interactions: 15 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:S.12, B:Y.13, B:G.14, B:H.15, B:I.16, B:T.84, B:R.85, B:F.86, B:S.119, B:S.119, B:A.121, B:S.122, B:G.125, D:H.140 Salt bridges: B:H.15 pi-Stacking: B:F.86 FMN.3: 18 residues within 4Å: Chain A: D.98, H.140 Chain C: S.11, S.12, Y.13, G.14, H.15, I.16, P.83, T.84, R.85, F.86, S.119, T.120, A.121, S.122, G.125, A.173 16 PLIP interactions: 15 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:S.12, C:Y.13, C:G.14, C:H.15, C:I.16, C:T.84, C:R.85, C:F.86, C:S.119, C:S.119, C:A.121, C:S.122, C:G.125, A:H.140 Salt bridges: C:H.15 pi-Stacking: C:F.86 FMN.4: 19 residues within 4Å: Chain A: Y.150 Chain B: D.98, H.140 Chain D: S.11, S.12, Y.13, G.14, H.15, I.16, P.83, T.84, R.85, F.86, S.119, T.120, A.121, S.122, G.125, A.173 16 PLIP interactions: 15 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:S.12, D:Y.13, D:G.14, D:H.15, D:I.16, D:T.84, D:R.85, D:F.86, D:S.119, D:S.119, D:A.121, D:S.122, A:Y.150 Salt bridges: D:H.15 pi-Stacking: D:F.86, D:F.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, J. et al., Crystal structure of PnpB complex with FMN. To be Published

Release Date

2014-06-25

Peptides

NAD(P)H dehydrogenase (quinone): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

NAD(P)H dehydrogenase (quinone)

Related Entries With Identical Sequence