SMTL ID : 4lb5.1

Crystal structure of PKZ Zalpha in complex with ds(CG)6 (hexagonal form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain A: L.37, E.38, T.41 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.41 Hydrogen bonds: A:E.38, A:T.41, A:T.41 ACT.2: 4 residues within 4Å: Chain A: H.23, G.24, R.25, N.68 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.25, A:N.68 ACT.3: 2 residues within 4Å: Chain B: K.63, R.64 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:K.63 Salt bridges: B:K.63, B:R.64 ACT.4: 3 residues within 4Å: Chain D: L.37, E.38, T.41 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:T.41 Hydrogen bonds: D:E.38, D:T.41 ACT.5: 4 residues within 4Å: Chain D: H.23, G.24, R.25, N.68 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.25, D:N.68 ACT.6: 2 residues within 4Å: Chain E: K.63, R.64 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:K.63 Salt bridges: E:K.63, E:R.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Rosa, M. et al., Structural basis for Z-DNA binding and stabilization by the zebrafish Z-DNA dependent protein kinase PKZ. Nucleic Acids Res. (2013)

Release Date

2013-09-18

Peptides

Protein kinase containing Z-DNA binding domains: ABDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
A

E
B

Protein kinase containing Z-DNA binding domains

Related Entries With Identical Sequence