- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.22 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 5 residues within 4Å:- Chain A: T.24, D.50, T.61, D.80
- Ligands: GNP.1
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:T.24, A:T.61, H2O.5, H2O.5
MG.12: 5 residues within 4Å:- Chain B: T.24, D.50, T.61, D.80
- Ligands: GNP.11
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:T.24, B:T.61, H2O.13, H2O.13
- 2 x NH4: AMMONIUM ION(Non-functional Binders)
NH4.3: 5 residues within 4Å:- Chain A: I.49, D.50, E.55, T.61, N.63
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.50, A:E.55
- Water bridges: A:A.52
NH4.13: 5 residues within 4Å:- Chain B: I.49, D.50, E.55, T.61, N.63
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.55
- Water bridges: B:A.52
- 14 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 4 residues within 4Å:- Chain A: P.111, M.112, P.113, R.116
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.116
SO4.5: 4 residues within 4Å:- Chain A: K.44, H.66, H.272, R.273
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.42
- Water bridges: A:K.44, A:E.68
- Salt bridges: A:K.44, A:H.272
SO4.6: 2 residues within 4Å:- Chain A: R.58, H.84
3 PLIP interactions:3 interactions with chain A- Water bridges: A:H.84
- Salt bridges: A:R.58, A:H.84
SO4.7: 2 residues within 4Å:- Chain A: R.290
- Chain B: K.247
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Water bridges: A:G.291, A:G.291
- Salt bridges: A:R.290, B:K.247
SO4.8: 4 residues within 4Å:- Chain A: R.329, H.330, T.331, R.392
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:H.330, A:T.331, A:T.331
- Water bridges: A:R.329
- Salt bridges: A:R.329, A:H.330, A:R.392
SO4.9: 1 residues within 4Å:- Chain A: R.56
2 PLIP interactions:2 interactions with chain A- Water bridges: A:D.48
- Salt bridges: A:R.56
SO4.10: 3 residues within 4Å:- Chain A: Q.180, R.183, N.184
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.180, A:N.184
- Water bridges: A:R.183
- Salt bridges: A:R.183
SO4.14: 4 residues within 4Å:- Chain B: P.111, M.112, P.113, R.116
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.116
SO4.15: 4 residues within 4Å:- Chain B: K.44, H.66, H.272, R.273
4 PLIP interactions:4 interactions with chain B- Water bridges: B:K.44, B:E.68
- Salt bridges: B:K.44, B:H.272
SO4.16: 2 residues within 4Å:- Chain B: R.58, H.84
3 PLIP interactions:3 interactions with chain B- Water bridges: B:H.84
- Salt bridges: B:R.58, B:H.84
SO4.17: 2 residues within 4Å:- Chain A: K.247
- Chain B: R.290
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Water bridges: B:G.291, B:G.291
- Salt bridges: B:R.290, A:K.247
SO4.18: 4 residues within 4Å:- Chain B: R.329, H.330, T.331, R.392
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:H.330, B:T.331, B:T.331
- Water bridges: B:R.329
- Salt bridges: B:R.329, B:H.330, B:R.392
SO4.19: 1 residues within 4Å:- Chain B: R.56
2 PLIP interactions:2 interactions with chain B- Water bridges: B:D.48
- Salt bridges: B:R.56
SO4.20: 3 residues within 4Å:- Chain B: Q.180, R.183, N.184
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Q.180, B:N.184
- Water bridges: B:R.183
- Salt bridges: B:R.183
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Grftehauge, M.K. et al., Identifying ligand-binding hot spots in proteins using brominated fragments. Acta Crystallogr.,Sect.F (2013)
- Release Date
- 2013-09-11
- Peptides
- Elongation factor Tu-A: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.22 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x NH4: AMMONIUM ION(Non-functional Binders)
- 14 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Grftehauge, M.K. et al., Identifying ligand-binding hot spots in proteins using brominated fragments. Acta Crystallogr.,Sect.F (2013)
- Release Date
- 2013-09-11
- Peptides
- Elongation factor Tu-A: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A