SMTL ID : 4ld7.1 (3 other biounits)

Crystal structure of AnaPT from Neosartorya fischeri

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.83 Å

Oligo State

homo-tetramer

Ligands

4 x PIS: TRIHYDROGEN THIODIPHOSPHATE(Non-covalent)

PIS.1: 10 residues within 4Å: Chain A: R.124, K.208, Y.210, R.278, K.280, Y.282, Q.355, Y.357, Y.422, Y.426 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.282, A:Q.355, A:Y.422, A:Y.426, A:Y.426 Salt bridges: A:R.124, A:K.208, A:R.278, A:K.280 PIS.3: 10 residues within 4Å: Chain B: R.124, K.208, Y.210, R.278, K.280, Y.282, Q.355, Y.357, Y.422, Y.426 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:K.208, B:Y.210, B:Y.282, B:Q.355 Salt bridges: B:R.124, B:K.208, B:R.278, B:K.280 PIS.5: 10 residues within 4Å: Chain C: R.124, K.208, Y.210, R.278, K.280, Y.282, Q.355, Y.357, Y.422, Y.426 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:Y.210, C:K.280, C:Y.282, C:Q.355, C:Y.357, C:Y.426 Salt bridges: C:R.124, C:K.208, C:R.278, C:K.280 PIS.7: 10 residues within 4Å: Chain D: R.124, K.208, Y.210, R.278, K.280, Y.282, Q.355, Y.357, Y.422, Y.426 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:Y.282, D:Q.355, D:Y.357, D:Y.422, D:Y.422, D:Y.422, D:Y.426, D:Y.426 Salt bridges: D:R.124, D:K.208, D:R.278, D:K.280

4 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: L.360, R.363, D.365, T.405, Q.408 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.408 NA.4: 6 residues within 4Å: Chain B: L.360, R.363, D.365, M.368, T.405, Q.408 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.405 NA.6: 5 residues within 4Å: Chain C: L.360, R.363, D.365, T.405, Q.408 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:L.360 NA.8: 6 residues within 4Å: Chain D: L.360, R.363, D.365, M.368, T.405, Q.408 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.365

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, X. et al., Catalytic Mechanism of Stereospecific Formation of cis-Configured Prenylated Pyrroloindoline Diketopiperazines by Indole Prenyltransferases. Chem.Biol. (2013)

Release Date

2013-12-11

Peptides

Dimethylallyl tryptophan synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Dimethylallyl tryptophan synthase

Related Entries With Identical Sequence