SMTL ID : 4lde.1

Structure of beta2 adrenoceptor bound to BI167107 and an engineered nanobody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

hetero-1-1-mer

Ligands

1 x P0G: 8-[(1R)-2-{[1,1-dimethyl-2-(2-methylphenyl)ethyl]amino}-1-hydroxyethyl]-5-hydroxy-2H-1,4-benzoxazin-3(4H)-one(Non-covalent)

P0G.1: 18 residues within 4Å: Chain A: W.258, T.259, D.262, V.263, V.266, C.340, F.342, A.349, S.352, S.353, S.356, F.410, F.411, N.414, Y.429, I.430, N.433, Y.437 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:W.258, A:T.259, A:V.263, A:V.266, A:F.342, A:F.342, A:F.342, A:F.410, A:I.430 Hydrogen bonds: A:D.262, A:S.352, A:S.352, A:S.356, A:S.356, A:N.414, A:Y.429, A:N.433, A:Y.437 pi-Stacking: A:F.411

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: N.252, C.333, Y.334, E.336, C.339 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.336

1 x 1WV: (2S)-2,3-dihydroxypropyl (7Z)-tetradec-7-enoate(Non-covalent)

1WV.3: 6 residues within 4Å: Chain A: M.189, I.192, I.243, E.427, I.430, W.434 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.192, A:I.243, A:I.430, A:W.434

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ring, A.M. et al., Adrenaline-activated structure of beta 2-adrenoceptor stabilized by an engineered nanobody. Nature (2013)

Release Date

2013-09-25

Peptides

Lysozyme, Beta-2 adrenergic receptor: A
Camelid Antibody Fragment: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Lysozyme, Beta-2 adrenergic receptor

Camelid Antibody Fragment

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