SMTL ID : 4ldo.1

Structure of beta2 adrenoceptor bound to adrenaline and an engineered nanobody

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 1WV: (2S)-2,3-dihydroxypropyl (7Z)-tetradec-7-enoate(Non-covalent)

1WV.1: 4 residues within 4Å: Chain A: M.189, I.243, L.431, W.434 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.243, A:L.431, A:W.434, A:W.434

1 x ALE: L-EPINEPHRINE(Non-covalent)

ALE.2: 11 residues within 4Å: Chain A: D.262, V.263, V.266, F.342, S.352, S.356, F.410, F.411, N.414, N.433, Y.437 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.263, A:V.266, A:V.266, A:F.342, A:F.410 Hydrogen bonds: A:S.352, A:S.352, A:S.356, A:N.414, A:N.433, A:N.433 pi-Stacking: A:F.411

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: N.252, C.333, E.336, C.339 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.252 NA.4: 1 residues within 4Å: Chain A: N.10 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ring, A.M. et al., Adrenaline-activated structure of beta 2-adrenoceptor stabilized by an engineered nanobody. Nature (2013)

Release Date

2013-09-25

Peptides

Lysozyme, Beta-2 adrenergic receptor: A
Camelid Antibody Fragment: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Lysozyme, Beta-2 adrenergic receptor

Camelid Antibody Fragment

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