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SMTL ID : 4lf1.2
(3 other biounits)
Hexameric Form II RuBisCO from Rhodopseudomonas palustris, activated and complexed with 2-CABP
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.38 Å
Oligo State
homo-dimer
Ligands
2 x
CAP
:
2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
(Non-covalent)
CAP.1:
20 residues within 4Å:
Chain A:
I.185
,
K.187
,
K.189
,
K.212
,
D.214
,
E.215
,
H.308
,
R.309
,
H.342
,
K.350
,
S.389
,
G.390
,
G.391
,
A.413
,
G.414
,
G.415
Chain B:
E.69
,
T.74
,
N.132
Ligands:
MG.2
19
PLIP interactions
:
16 interactions with chain A
,
3 interactions with chain B
Hydrogen bonds:
A:K.187
,
A:S.389
,
A:G.391
,
A:G.414
,
A:G.415
,
B:T.74
,
B:T.74
,
B:N.132
Water bridges:
A:R.309
,
A:H.312
,
A:G.344
,
A:G.390
Salt bridges:
A:K.187
,
A:K.187
,
A:K.189
,
A:R.309
,
A:H.342
,
A:K.350
,
A:K.350
CAP.3:
21 residues within 4Å:
Chain A:
E.69
,
T.74
,
N.132
Chain B:
I.185
,
K.187
,
K.189
,
K.212
,
D.214
,
E.215
,
H.308
,
R.309
,
H.342
,
K.350
,
M.351
,
S.389
,
G.390
,
G.391
,
A.413
,
G.414
,
G.415
Ligands:
MG.4
22
PLIP interactions
:
19 interactions with chain B
,
3 interactions with chain A
Hydrogen bonds:
B:K.187
,
B:S.389
,
B:G.391
,
B:G.414
,
B:G.415
,
A:T.74
,
A:T.74
,
A:N.132
Water bridges:
B:R.309
,
B:R.309
,
B:H.312
,
B:G.344
,
B:M.392
,
B:M.392
,
B:M.392
Salt bridges:
B:K.187
,
B:K.187
,
B:K.189
,
B:R.309
,
B:H.342
,
B:K.350
,
B:K.350
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.2:
7 residues within 4Å:
Chain A:
K.187
,
K.189
,
K.212
,
D.214
,
E.215
Chain B:
N.132
Ligands:
CAP.1
2
PLIP interactions
:
2 interactions with chain A
Metal complexes:
A:D.214
,
A:E.215
MG.4:
6 residues within 4Å:
Chain A:
N.132
Chain B:
K.212
,
D.214
,
E.215
,
H.308
Ligands:
CAP.3
2
PLIP interactions
:
2 interactions with chain B
Metal complexes:
B:D.214
,
B:E.215
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Satagopan, S. et al., Structure-function studies with the unique hexameric form II ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Rhodopseudomonas palustris. J.Biol.Chem. (2014)
Release Date
2014-06-25
Peptides
Ribulose bisphosphate carboxylase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Ribulose bisphosphate carboxylase
Related Entries With Identical Sequence
4lf1.1
|
4lf1.3
|
4lf1.4
|
4lf2.1
|
4lf2.2
|
4lf2.3
|
4lf2.4
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