SMTL ID : 4lfh.1

Crystal Structure of 9C2 TCR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: N.134 Chain B: P.136, T.137, I.138, I.228, P.230 No protein-ligand interaction detected (PLIP)

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 9 residues within 4Å: Chain B: I.24, T.25, D.27, Y.96, Y.97, C.98, G.116, S.117, G.118 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:I.24 Hydrogen bonds: B:T.25, B:D.27, B:C.98, B:G.118

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain B: V.55, T.75, R.78, W.79, W.81 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.75, B:R.78, B:W.79 NA.4: 1 residues within 4Å: Chain B: N.91 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.91, B:N.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Uldrich, A.P. et al., CD1d-lipid antigen recognition by the gamma delta TCR. Nat.Immunol. (2013)

Release Date

2013-10-02

Peptides

9C2 TCR delta chain: A
9C2 TCR gamma chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
G

9C2 TCR delta chain

9C2 TCR gamma chain

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