SMTL ID : 4lfy.3 (2 other biounits)

Crystal structure of a dihydroorotase from Burkholderia cenocepacia J2315

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.39, H.41, K.125, D.276 Ligands: ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.39, A:H.41, A:D.276, H2O.6 ZN.2: 5 residues within 4Å: Chain A: H.39, K.125, H.162, H.200 Ligands: ZN.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.162, A:H.200, H2O.6 ZN.6: 5 residues within 4Å: Chain B: H.39, H.41, K.125, D.276 Ligands: ZN.7 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.39, B:H.41, B:D.276, H2O.17 ZN.7: 4 residues within 4Å: Chain B: K.125, H.162, H.200 Ligands: ZN.6 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.162, B:H.200, H2O.17

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: R.116, G.156, K.195, F.328, Y.329, G.330 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.195, A:F.328 Water bridges: A:R.116 EDO.8: 6 residues within 4Å: Chain B: R.116, G.156, K.195, F.328, Y.329, G.330 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.328 Water bridges: B:K.195

4 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain A: R.233, R.253 Chain B: R.233, R.253 Ligands: CA.9 No protein-ligand interaction detected (PLIP) CA.5: 3 residues within 4Å: Chain A: R.253, E.254, T.255 No protein-ligand interaction detected (PLIP) CA.9: 6 residues within 4Å: Chain A: F.173, R.233, R.253 Chain B: R.233, R.253 Ligands: CA.4 No protein-ligand interaction detected (PLIP) CA.10: 3 residues within 4Å: Chain B: R.253, E.254, T.255 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lukacs, C.M. et al., Crystal structure of a dihydroorotase from Burkholderia cenocepacia J2315. To be Published

Release Date

2013-07-10

Peptides

Dihydroorotase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dihydroorotase

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