SMTL ID : 4lg8.1

Crystal structure of PRPF19 WD40 repeats

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: D.262, D.263, S.264, N.284 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.284 NA.2: 2 residues within 4Å: Chain A: T.322 Ligands: UNX.15 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.322, A:T.322

14 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 5 residues within 4Å: Chain A: S.119, G.161, L.162 Ligands: UNX.4, UNX.13 No protein-ligand interaction detected (PLIP) UNX.4: 5 residues within 4Å: Chain A: V.121, L.162, Q.207 Ligands: UNX.3, UNX.5 No protein-ligand interaction detected (PLIP) UNX.5: 3 residues within 4Å: Chain A: V.120, V.121 Ligands: UNX.4 No protein-ligand interaction detected (PLIP) UNX.6: 2 residues within 4Å: Chain A: K.94, T.114 No protein-ligand interaction detected (PLIP) UNX.7: 5 residues within 4Å: Chain A: C.205, Q.207, S.247, I.248 Ligands: UNX.13 No protein-ligand interaction detected (PLIP) UNX.8: 4 residues within 4Å: Chain A: L.77, S.290, G.330, V.331 No protein-ligand interaction detected (PLIP) UNX.9: 3 residues within 4Å: Chain A: E.156, D.177, K.193 No protein-ligand interaction detected (PLIP) UNX.10: 1 residues within 4Å: Chain A: F.99 No protein-ligand interaction detected (PLIP) UNX.11: 4 residues within 4Å: Chain A: T.109, L.110, K.111, A.146 No protein-ligand interaction detected (PLIP) UNX.12: 1 residues within 4Å: Chain A: T.160 No protein-ligand interaction detected (PLIP) UNX.13: 6 residues within 4Å: Chain A: G.161, C.205, A.206, Q.207 Ligands: UNX.3, UNX.7 No protein-ligand interaction detected (PLIP) UNX.14: 1 residues within 4Å: Chain A: E.323 No protein-ligand interaction detected (PLIP) UNX.15: 3 residues within 4Å: Chain A: T.322, E.323 Ligands: NA.2 No protein-ligand interaction detected (PLIP) UNX.16: 3 residues within 4Å: Chain A: N.276, K.278, T.279 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Crystal structure of the WD40 domain of human PRPF19. Biochem. Biophys. Res. Commun. (2017)

Release Date

2013-08-07

Peptides

Pre-mRNA-processing factor 19: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pre-mRNA-processing factor 19