SMTL ID : 4lh5.1

Dual inhibition of HIV-1 replication by Integrase-LEDGF allosteric inhibitors is predominant at post-integration stage during virus production rather than at integration

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-dimer

Ligands

2 x LF0: (2S)-tert-butoxy[4-(3,4-dihydro-2H-chromen-6-yl)-2-methylquinolin-3-yl]ethanoic acid(Non-covalent)

LF0.1: 12 residues within 4Å: Chain A: A.139, E.140, H.141, T.144, M.148 Chain B: Q.65, L.72, T.94, T.95, A.98, A.99, W.102 11 PLIP interactions: 5 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:E.140, A:H.141, A:T.144, A:T.144 Salt bridges: A:H.141 Hydrophobic interactions: B:Q.65, B:L.72, B:T.94, B:T.95, B:W.102 Water bridges: B:Q.65 LF0.3: 12 residues within 4Å: Chain A: Q.65, L.72, T.94, T.95, A.98, A.99, W.102 Chain B: A.139, E.140, H.141, T.144, M.148 10 PLIP interactions: 4 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:E.140, B:H.141, B:T.144 Salt bridges: B:H.141 Hydrophobic interactions: A:Q.65, A:L.72, A:T.94, A:T.95, A:W.102 Water bridges: A:Q.65

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.34, C.35, N.90 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain B: D.34, C.35, N.90 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Le Rouzic, E. et al., Dual inhibition of HIV-1 replication by integrase-LEDGF allosteric inhibitors is predominant at the post-integration stage. Retrovirology (2013)

Release Date

2013-12-25

Peptides

Integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Integrase

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