SMTL ID : 4lii.1

Crystal structure of an apoptosis-inducing factor, mitochondrion-associated, 1 (AIFM1) from Homo sapiens at 1.88 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 34 residues within 4Å: Chain A: I.39, G.40, G.41, G.42, T.43, A.44, V.64, S.65, E.66, D.67, R.74, P.75, S.78, K.79, K.133, K.134, V.135, A.161, T.162, G.163, F.186, R.187, K.188, L.213, N.305, L.308, G.339, D.340, E.355, H.356, H.357, A.360, F.384, W.385 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:R.74, A:F.186, A:L.213 Hydrogen bonds: A:G.41, A:T.43, A:T.43, A:A.44, A:E.66, A:R.74, A:K.79, A:V.135, A:V.135, A:K.188, A:K.188, A:D.340, A:E.355, A:H.357, A:W.385, A:W.385 Water bridges: A:G.41, A:G.42, A:T.43, A:A.45, A:S.65, A:R.187, A:R.187, A:R.187, A:A.341, A:H.357, A:D.358, A:A.360 Salt bridges: A:R.74, A:R.187

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: L.70, Y.113, V.114, A.128, V.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.114, A:V.129 Water bridges: A:A.116 EDO.3: 5 residues within 4Å: Chain A: G.211, M.242, G.243, K.244, I.245 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.244 Water bridges: A:G.210, A:G.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG) et al., Crystal structure of an apoptosis-inducing factor, mitochondrion-associated, 1 (AIFM1) from Homo sapiens at 1.88 A resolution. To be published

Release Date

2013-09-04

Peptides

Apoptosis-inducing factor 1, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Apoptosis-inducing factor 1, mitochondrial