SMTL ID : 4liq.1

Structure of the extracellular domain of human CSF-1 receptor in complex with the Fab fragment of RG7155

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 9 residues within 4Å: Chain A: G.335, F.336, N.337, W.338, T.339, Q.348, L.384, R.386, W.391 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.386 Hydrophobic interactions: A:L.384, A:W.391

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.2: 8 residues within 4Å: Chain A: Q.428, P.429, N.430, D.453, P.455, H.490, N.491, S.492 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.430 Water bridges: A:S.492 Hydrogen bonds: A:N.430

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 7 residues within 4Å: Chain A: N.242, F.272, Q.273, A.275, G.276, N.277, F.294 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.273, A:N.277

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain C: K.39, K.42, K.45 5 PLIP interactions: 5 interactions with chain C Water bridges: C:K.39, C:K.39 Salt bridges: C:K.39, C:K.42, C:K.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ries, C.H. et al., Targeting tumor-associated macrophages with anti-CSF-1R antibody reveals a strategy for cancer therapy. Cancer Cell (2014)

Release Date

2014-06-18

Peptides

Macrophage colony-stimulating factor 1 receptor: A
Fab fragment RG7155 heavy chain: B
Fab fragment RG7155 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
H

C
L

Macrophage colony-stimulating factor 1 receptor

Fab fragment RG7155 heavy chain

Fab fragment RG7155 light chain