SMTL ID : 4lj7.1 (2 other biounits)

ClpB NBD2 K601Q from T. thermophilus in complex with MANT-dADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x MNT: 2'(3')-O-N-METHYLANTHRANILOYL-ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

MNT.1: 17 residues within 4Å: Chain A: R.44, V.45, V.46, T.82, G.83, V.84, G.85, Q.86, T.87, E.88, L.242, I.250, Q.254, A.290, R.291, R.294 Ligands: PO4.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:E.88, A:Q.254, A:R.294, A:R.294 Hydrogen bonds: A:V.46, A:V.46, A:G.83, A:V.84, A:G.85, A:Q.86, A:T.87, A:T.87, A:T.87, A:E.88 Salt bridges: A:R.291, A:R.291

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 9 residues within 4Å: Chain A: T.82, Q.86, R.106, D.152, E.153, T.192, N.194, R.291 Ligands: MNT.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.106, A:T.192, A:T.192, A:N.194 Salt bridges: A:R.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zeymer, C. et al., Elements in nucleotide sensing and hydrolysis of the AAA+ disaggregation machine ClpB: a structure-based mechanistic dissection of a molecular motor. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-02-12

Peptides

Chaperone protein ClpB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chaperone protein ClpB

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