SMTL ID : 4ljy.1

Crystal structure of RNA splicing effector Prp5 in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: W.52, F.71, S.73, L.74, T.75, Q.78, K.96, T.97, G.98, S.99, G.100, K.101, T.102 Ligands: MG.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:S.73, A:T.75, A:Q.78, A:K.96, A:G.98, A:S.99, A:G.100, A:K.101, A:T.102, A:T.102, A:E.144 Water bridges: A:S.73, A:K.101, A:T.102, A:T.102, A:E.144, A:D.210, A:E.211 Salt bridges: A:K.101 pi-Stacking: A:F.71, A:F.71

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.102, D.210, E.211 Ligands: ADP.1 No protein-ligand interaction detected (PLIP)

2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.3: 5 residues within 4Å: Chain A: E.30, S.34, K.399, F.401, F.462 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.30, A:F.401, A:F.462 MRD.4: 3 residues within 4Å: Chain A: T.43, R.89, S.258 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z.M. et al., Crystal structure of Prp5p reveals interdomain interactions that impact spliceosome assembly. Cell Rep (2013)

Release Date

2013-12-11

Peptides

Pre-mRNA-processing ATP-dependent RNA helicase PRP5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pre-mRNA-processing ATP-dependent RNA helicase PRP5

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