SMTL ID : 4ll5.1

Crystal Structure of Pim-1 in complex with the fluorescent compound SKF86002

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x SK8: 6-(4-fluorophenyl)-5-(pyridin-4-yl)-2,3-dihydroimidazo[2,1-b][1,3]thiazole(Non-covalent)

SK8.1: 13 residues within 4Å: Chain A: L.17, G.18, F.22, V.25, A.38, K.40, E.94, R.95, P.96, V.99, L.147, I.158, D.159 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.25, A:A.38, A:L.147 Water bridges: A:D.159

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: F.103, I.106, D.143, D.207, G.211, D.212 Ligands: CA.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.212 GOL.3: 3 residues within 4Å: Chain A: H.238, H.260, P.261 No protein-ligand interaction detected (PLIP) GOL.4: 3 residues within 4Å: Chain A: D.81, W.82, F.83 No protein-ligand interaction detected (PLIP) GOL.5: 3 residues within 4Å: Chain A: D.140, K.142, D.175 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.142, A:D.175 Water bridges: A:G.21, A:N.145, A:D.159

1 x CA: CALCIUM ION(Non-covalent)

CA.6: 4 residues within 4Å: Chain A: D.143, Y.180, I.213 Ligands: GOL.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.143, A:Y.180, H2O.7, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parker, L.J. et al., Kinase crystal identification and ATP-competitive inhibitor screening using the fluorescent ligand SKF86002. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-02-12

Peptides

Serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase pim-1

Related Entries With Identical Sequence