- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x IPE: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
- 2 x GST: GERANYL S-THIOLODIPHOSPHATE(Non-covalent)
GST.2: 15 residues within 4Å:- Chain A: S.98, H.101, D.102, D.108, R.113, M.171, V.172, Q.175, K.200, D.238, K.252
- Chain B: L.130
- Ligands: IPE.1, CA.3, CA.4
18 PLIP interactions:17 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:H.101, A:V.172, A:Q.175, A:K.200, B:L.130
- Water bridges: A:D.110, A:R.113, A:K.200, A:K.200, A:K.200, A:K.252, A:K.256, A:K.256, A:K.256, A:K.256
- Salt bridges: A:R.113, A:K.252, A:K.256
GST.7: 16 residues within 4Å:- Chain A: L.130
- Chain B: S.98, H.101, D.102, D.108, R.113, M.171, V.172, Q.175, K.200, D.238, K.252
- Ligands: IPE.6, CA.8, CA.9, CA.10
13 PLIP interactions:12 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:H.101, B:V.172, B:Q.175, A:L.130
- Hydrogen bonds: B:D.102, B:K.200
- Water bridges: B:R.113, B:D.238, B:K.252, B:D.257, B:D.257
- Salt bridges: B:R.113, B:K.252
- 6 x CA: CALCIUM ION(Non-covalent)
CA.3: 2 residues within 4Å:- Chain A: D.238
- Ligands: GST.2
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.238, H2O.4, H2O.5, H2O.5
CA.4: 3 residues within 4Å:- Chain A: D.102, D.108
- Ligands: GST.2
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.102, A:D.108, H2O.3, H2O.9
CA.5: 3 residues within 4Å:- Chain A: D.108, D.178, E.182
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.108, A:E.182, H2O.5, H2O.5, H2O.9
CA.8: 3 residues within 4Å:- Chain B: D.102, D.108
- Ligands: GST.7
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.102, B:D.108, H2O.14, H2O.17
CA.9: 2 residues within 4Å:- Chain B: D.238
- Ligands: GST.7
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.238, H2O.14, H2O.14, H2O.17
CA.10: 4 residues within 4Å:- Chain B: D.108, D.178, K.200
- Ligands: GST.7
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.108, B:D.108, H2O.14, H2O.17, H2O.17
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, J. et al., Crystal structure of a farnesyl diphosphate synthase from Roseobacter denitrificans OCh 114, target EFI-509393, with IPP, GSPP and calcium bound in active site. To be Published
- Release Date
- 2013-07-24
- Peptides
- Geranyltranstransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x IPE: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
- 2 x GST: GERANYL S-THIOLODIPHOSPHATE(Non-covalent)
- 6 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, J. et al., Crystal structure of a farnesyl diphosphate synthase from Roseobacter denitrificans OCh 114, target EFI-509393, with IPP, GSPP and calcium bound in active site. To be Published
- Release Date
- 2013-07-24
- Peptides
- Geranyltranstransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B