SMTL ID : 4llw.2 (1 other biounit)

Crystal structure of Pertuzumab Clambda Fab with variable domain redesign (VRD2) at 1.95A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: H.170 Chain B: Q.168, S.169 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:T.171 Salt bridges: A:H.170 Hydrogen bonds: B:S.169 SO4.2: 4 residues within 4Å: Chain A: Q.177, S.178 Chain B: G.159, E.161 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.177, A:S.178, B:G.159, B:E.161, B:E.161 SO4.3: 5 residues within 4Å: Chain A: K.149, D.150, Q.177 Chain B: K.130, S.180 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.180, B:S.180, A:Q.177 Salt bridges: B:K.130, A:K.149 SO4.4: 4 residues within 4Å: Chain A: V.72, D.73, R.74, S.75 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.74, A:S.75 Salt bridges: A:R.74 SO4.5: 3 residues within 4Å: Chain A: F.27, T.28, Y.32 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.28, A:Y.32, A:Y.32 SO4.6: 3 residues within 4Å: Chain B: P.59, R.61, E.81 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.81 Water bridges: B:R.61 Salt bridges: B:R.61 SO4.7: 4 residues within 4Å: Chain A: Y.39 Chain B: R.38, P.40, G.41 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.41 Water bridges: B:R.38, B:R.38 Salt bridges: B:R.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lewis, S.M. et al., Generation of bispecific IgG antibodies by structure-based design of an orthogonal Fab interface. Nat.Biotechnol. (2014)

Release Date

2014-01-29

Peptides

mutated Pertuzumab Fab heavy chain: A
light chain Clambda: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

mutated Pertuzumab Fab heavy chain

light chain Clambda

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