SMTL ID : 4lmd.2 (1 other biounit)

Crystal structure of the JCV large t-antigen origin binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 2 residues within 4Å: Chain A: H.73, R.74 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.74 Water bridges: A:T.27, A:T.27, A:P.72, A:R.74 Salt bridges: A:H.73, A:R.74 FLC.2: 2 residues within 4Å: Chain A: S.24, N.25 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.25, A:N.25

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: S.19, A.21, S.24, R.26, V.28, V.77, G.97 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.19, A:S.19, A:R.26, A:R.26, A:G.97 Water bridges: A:N.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meinke, G. et al., Insights into the Initiation of JC Virus DNA Replication Derived from the Crystal Structure of the T-Antigen Origin Binding Domain. Plos Pathog. (2014)

Release Date

2014-04-02

Peptides

Large T antigen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Large T antigen

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