SMTL ID : 4lq6.1

Crystal structure of Rv3717 reveals a novel amidase from M. tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.12, E.47, H.102, A.103 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.12, A:E.47, A:H.102, H2O.1, H2O.1, H2O.2

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: T.39, S.40, K.182 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.182

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: R.138 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: N.123, A.124 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: L.163, A.164, G.165 Ligands: CL.6, PT.9 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: K.32, L.163, A.164 Ligands: CL.5, PT.9 Ligand excluded by PLIP

3 x PT: PLATINUM (II) ION(Non-covalent)

PT.7: 1 residues within 4Å: Chain A: M.4 No protein-ligand interaction detected (PLIP) PT.8: 2 residues within 4Å: Chain A: E.85, M.89 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.85 PT.9: 3 residues within 4Å: Chain A: L.163 Ligands: CL.5, CL.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., The structure of Rv3717 reveals a novel amidase from Mycobacterium tuberculosis. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-12-04

Peptides

N-acetymuramyl-L-alanine amidase-related protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-acetymuramyl-L-alanine amidase-related protein