SMTL ID : 4lqx.1

Crystal structure of a TENA/THI-4 domain-containing protein (SSO2700) from Sulfolobus solfataricus P2 at 2.34 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.23, C.26, H.39, H.52 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.23, A:C.26, A:H.39, A:H.52 ZN.18: 4 residues within 4Å: Chain B: C.23, C.26, H.39, H.52 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.23, B:C.26, B:H.39, B:H.52

2 x UNL: UNKNOWN LIGAND

UNL.2: 10 residues within 4Å: Chain A: Y.119, H.123, F.126, L.220, E.221, V.223, Y.237, F.298, R.305 Ligands: EDO.14 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.119, A:Y.119, A:Y.119, A:Y.237, A:R.305, A:R.305 UNL.19: 10 residues within 4Å: Chain B: Y.119, H.123, F.126, L.220, E.221, V.223, Y.237, F.298, R.305 Ligands: EDO.27 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.119, B:Y.119, B:R.305, B:R.305 Water bridges: B:Y.119, B:Y.119

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: M.54, R.58 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.95, A:S.299, A:S.299 Salt bridges: A:R.58 SO4.4: 3 residues within 4Å: Chain A: R.58, D.296, K.300 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.58, A:D.296, A:K.300 Salt bridges: A:R.58, A:K.300 SO4.5: 2 residues within 4Å: Chain A: R.226, K.230 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.226, A:K.230 SO4.20: 3 residues within 4Å: Chain B: R.58, R.95, S.299 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.299, B:S.299 Water bridges: B:R.58, B:R.95 Salt bridges: B:R.58, B:R.95 SO4.21: 2 residues within 4Å: Chain B: P.165, R.173 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.173

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain A: E.313, P.314, S.315 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain A: S.196 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain A: Q.250 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: T.209, W.210 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain A: K.143, D.144 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: P.81, N.82 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain A: E.282, M.283, K.284 Ligands: EDO.16 Ligand excluded by PLIP CL.22: 1 residues within 4Å: Chain B: S.196 Ligand excluded by PLIP CL.23: 2 residues within 4Å: Chain B: P.249, Q.250 Ligand excluded by PLIP CL.24: 2 residues within 4Å: Chain B: T.209, W.210 Ligand excluded by PLIP CL.25: 2 residues within 4Å: Chain B: P.314, S.315 Ligand excluded by PLIP CL.26: 3 residues within 4Å: Chain B: P.81, N.82, S.83 Ligand excluded by PLIP

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.13: 2 residues within 4Å: Chain A: K.199, T.200 No protein-ligand interaction detected (PLIP) EDO.14: 7 residues within 4Å: Chain A: L.127, W.130, E.157, H.167, E.221, D.263 Ligands: UNL.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.157, A:E.221, A:D.263 EDO.15: 5 residues within 4Å: Chain A: K.140, T.141 Chain B: K.132, R.202 Ligands: EDO.30 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.140 EDO.16: 3 residues within 4Å: Chain A: K.284, E.285 Ligands: CL.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.285 EDO.17: 5 residues within 4Å: Chain A: L.127, E.157, Y.168 Chain B: Q.148, L.151 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.148, A:E.157 EDO.27: 5 residues within 4Å: Chain B: L.127, E.157, H.167, D.263 Ligands: UNL.19 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.167, B:D.263 EDO.28: 5 residues within 4Å: Chain A: Q.148 Chain B: V.131, E.157, F.158, Y.168 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.157, A:Q.148 EDO.29: 6 residues within 4Å: Chain B: D.41, L.56, S.61, K.63, R.64, M.65 No protein-ligand interaction detected (PLIP) EDO.30: 7 residues within 4Å: Chain A: T.141, D.142, K.143, D.144, L.147 Chain B: K.132 Ligands: EDO.15 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.132, A:K.143 Water bridges: B:K.128 EDO.31: 2 residues within 4Å: Chain B: K.199, T.200 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.200 Water bridges: B:T.200, B:T.200, B:T.200

Links

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Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a TENA/THI-4 domain-containing protein (SSO2700) from Sulfolobus solfataricus P2 at 2.34 A resolution. To be published

Release Date

2013-09-04

Peptides

TENA/THI-4 domain-containing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TENA/THI-4 domain-containing protein