SMTL ID : 4lrd.1

Phosphopentomutase 4H11 variant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

3 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: T.107, D.308, H.313, H.361 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.308, A:H.313, A:H.361, H2O.1, H2O.1 MN.2: 4 residues within 4Å: Chain A: D.35, T.107, D.349, H.350 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.35, A:D.35, A:T.107, A:D.349, A:H.350 MN.3: 4 residues within 4Å: Chain A: F.48, G.49, D.50, H.356 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:G.49, A:D.50, A:H.356, H2O.3, H2O.4, H2O.6

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 2 residues within 4Å: Chain A: N.412, E.413 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.412, A:E.413

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: E.397, M.403, S.409, N.412 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.409, A:N.412 GOL.6: 3 residues within 4Å: Chain A: G.52, D.54, H.58 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.52, A:R.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Birmingham, W.R. et al., Bioretrosynthetic construction of a didanosine biosynthetic pathway. Nat.Chem.Biol. (2014)

Release Date

2013-07-31

Peptides

Phosphopentomutase 4H11 variant: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphopentomutase 4H11 variant