SMTL ID : 4lre.1 (2 other biounits)

Phosphopentomutase soaked with 2,3-dideoxyribose 5-phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: T.107, D.178, D.308, H.313, H.361 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.178, A:D.308, A:D.308, A:H.313, A:H.361 MN.2: 4 residues within 4Å: Chain A: D.35, T.107, D.349, H.350 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.35, A:D.35, A:T.107, A:D.349, A:H.350 MN.3: 3 residues within 4Å: Chain A: G.49, D.50, H.356 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:G.49, A:D.50, A:H.356, H2O.6, H2O.10, H2O.10

1 x 1X4: 2,3-dideoxy-5-O-phosphono-alpha-D-ribofuranose(Non-covalent)

1X4.4: 9 residues within 4Å: Chain A: A.152, S.153, G.154, Y.174, S.176, Q.182, I.217, R.219, R.230 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.217 Hydrogen bonds: A:G.154, A:Y.174, A:Q.182, A:R.219 Water bridges: A:S.176, A:S.176, A:R.234 Salt bridges: A:R.219, A:R.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Birmingham, W.R. et al., Bioretrosynthetic construction of a didanosine biosynthetic pathway. Nat.Chem.Biol. (2014)

Release Date

2013-07-31

Peptides

Phosphopentomutase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphopentomutase

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