SMTL ID : 4ls6.1

Crystal structure of beta-ketoacyl-ACP synthase II (FabF) I108F mutant from Bacillus subtilis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

homo-dimer

Ligands

3 x K: POTASSIUM ION(Non-covalent)

K.1: 5 residues within 4Å: Chain A: N.314, A.315, E.362, S.407, N.408 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.314, A:A.315, A:E.362, A:S.407, A:N.408 K.2: 3 residues within 4Å: Chain A: K.220, L.222, D.240 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:K.220, A:L.222, A:D.240, H2O.6, H2O.9 K.4: 5 residues within 4Å: Chain B: N.314, A.315, E.362, S.407, N.408 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.314, B:A.315, B:E.362, B:S.407, B:N.408

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: A.81, R.82, M.84, R.86, Q.89, E.126, M.150 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.89, A:E.126 Water bridges: A:A.81, A:R.86, A:R.86, A:Q.89, A:S.130 GOL.6: 6 residues within 4Å: Chain B: P.29, L.30, N.40, V.45, S.46, K.68 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.30, B:N.40, B:S.46, B:K.68 GOL.7: 7 residues within 4Å: Chain A: P.145, F.146, P.149 Chain B: N.219, H.281, I.282, T.283 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:P.145, B:N.219, B:T.283 Water bridges: B:H.281, B:H.281 GOL.8: 6 residues within 4Å: Chain B: Y.280, A.284, P.285, Q.287, Y.322, Y.326 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.280, B:Y.280, B:Q.287, B:Y.326 GOL.9: 3 residues within 4Å: Chain B: T.224, N.225, P.226 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.224, B:T.224

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain B: K.220, L.222, D.240 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trajtenberg, F. et al., Structural insights into bacterial resistance to cerulenin. Febs J. (2014)

Release Date

2014-04-02

Peptides

3-oxoacyl-[acyl-carrier-protein] synthase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-oxoacyl-[acyl-carrier-protein] synthase 2