SMTL ID : 4lsj.1 (1 other biounit)

Crystal Structure of the Glucocorticoid Receptor Ligand Binding Domain Bound to a Dibenzoxapine Sulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-2-2-mer

Ligands

4 x LSJ: N-{3-[(1Z)-1-(10-methoxydibenzo[b,e]oxepin-11(6H)-ylidene)propyl]phenyl}methanesulfonamide(Non-covalent)

LSJ.1: 19 residues within 4Å: Chain A: M.41, L.44, N.45, L.47, G.48, Q.51, W.81, M.82, M.85, L.89, F.104, M.120, M.127, L.213, Y.216, C.217, T.220, I.228, F.230 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.47, A:W.81, A:L.89, A:L.213, A:Y.216 Hydrogen bonds: A:N.45, A:N.45, A:T.220 pi-Stacking: A:F.104, A:F.104 LSJ.2: 5 residues within 4Å: Chain A: W.193, Q.194, F.196, Y.197, H.256 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.196, A:Y.197 pi-Stacking: A:Y.197, A:Y.197 LSJ.3: 19 residues within 4Å: Chain C: M.41, L.44, N.45, L.47, G.48, Q.51, W.81, M.82, M.85, L.89, F.104, M.120, M.127, L.213, Y.216, C.217, T.220, I.228, F.230 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:L.47, C:W.81, C:L.89, C:L.213, C:Y.216 Hydrogen bonds: C:N.45, C:N.45, C:T.220 pi-Stacking: C:F.104, C:F.104 LSJ.4: 5 residues within 4Å: Chain C: W.193, Q.194, F.196, Y.197, H.256 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.196, C:Y.197 pi-Stacking: C:Y.197, C:Y.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carson, M.W. et al., Glucocorticoid receptor modulators informed by crystallography lead to a new rationale for receptor selectivity, function, and implications for structure-based design. J.Med.Chem. (2014)

Release Date

2014-01-29

Peptides

Glucocorticoid receptor: AC
D30 peptide: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Glucocorticoid receptor

D30 peptide

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