SMTL ID : 4luj.1

Crystal structure of Orotidine 5'-monophosphate decarboxylase from methanocaldococcus jannaschii complexed with inhibitor BMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x BMP: 6-HYDROXYURIDINE-5'-PHOSPHATE(Non-covalent)

BMP.1: 18 residues within 4Å: Chain A: A.27, D.29, K.51, D.79, K.81, M.134, S.135, V.163, P.186, V.188, Q.191, I.209, V.210, G.211, R.212 Chain B: D.84, I.85, T.88 23 PLIP interactions: 21 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.163, A:P.186 Hydrogen bonds: A:D.29, A:K.51, A:D.79, A:K.81, A:S.135, A:S.135, A:S.135, A:V.188, A:Q.191, A:G.211, A:R.212, B:T.88, B:T.88 Water bridges: A:D.29, A:D.79, A:D.79, A:G.187, A:G.187, A:G.187, A:A.190 Salt bridges: A:R.212 BMP.2: 18 residues within 4Å: Chain A: D.84, I.85, T.88 Chain B: A.27, D.29, K.51, D.79, K.81, M.134, S.135, V.163, P.186, V.188, Q.191, I.209, V.210, G.211, R.212 19 PLIP interactions: 18 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.163, B:P.186 Hydrogen bonds: B:D.29, B:K.51, B:D.79, B:K.81, B:S.135, B:S.135, B:S.135, B:V.188, B:Q.191, B:G.211, B:R.212, A:T.88 Water bridges: B:G.187, B:G.187, B:G.187, B:A.190 Salt bridges: B:R.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fedorov, A.A. et al., Crystal structure of Orotidine 5'-monophosphate decarboxylase from methanocaldococcus jannaschii complexed with inhibitor BMP. To be Published

Release Date

2013-08-07

Peptides

Orotidine 5'-phosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Orotidine 5'-phosphate decarboxylase

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