SMTL ID : 4lv8.2 (2 other biounits)

Murine IRGa6 bound to Toxoplasma ROP5C, a pseudokinase GDI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: R.71, G.73, D.74, R.75, S.76, V.78, A.91, K.93, L.134, M.167, P.168, A.169, A.170, D.173, D.223, N.224, F.226 Ligands: MG.2, EDO.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:D.74, A:D.74, A:R.75, A:S.76, A:P.168, A:A.170, A:D.223, A:N.224 Water bridges: A:V.72, A:K.93 Salt bridges: A:K.93, A:K.93

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.223 Ligands: ADP.1 No protein-ligand interaction detected (PLIP)

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: L.134, M.167, F.226, G.236, D.237 Ligands: ADP.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.134, A:D.237 Water bridges: A:K.93, A:D.237 EDO.4: 5 residues within 4Å: Chain A: E.88, D.89, F.90, S.137, P.168 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.88, A:S.137, A:S.137 Water bridges: A:D.89 EDO.5: 4 residues within 4Å: Chain A: R.247, A.265, S.266, T.267 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.247, A:S.266, A:S.266, A:T.267 EDO.6: 6 residues within 4Å: Chain A: R.26, A.29, L.30, L.70, R.71, V.72 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.71, A:V.72, A:V.72 EDO.7: 8 residues within 4Å: Chain A: A.207, L.210, Q.211, H.272, D.275, A.276, L.346, P.347 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.207, A:Q.211, A:H.272, A:D.275, A:A.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reese, M.L. et al., Murine IRGa6 bound to Toxoplasma ROP5C, a pseudokinase GDI. To be Published

Release Date

2013-09-25

Peptides

Rhoptry protein 5 C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Rhoptry protein 5 C

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