SMTL ID : 4lwu.1

The 1.14A Crystal Structure of Humanized Xenopus MDM2 with RO5499252

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.14 Å

Oligo State

monomer

Ligands

1 x 20U: (2'S,3R,4'S,5'R)-N-(4-carbamoylphenyl)-6-chloro-4'-(3-chloro-2-fluorophenyl)-2'-(2,2-dimethylpropyl)-2-oxo-1,2-dihydrospiro[indole-3,3'-pyrrolidine]-5'-carboxamide(Non-covalent)

20U.1: 15 residues within 4Å: Chain A: L.30, L.33, G.34, I.37, M.38, Y.43, H.49, F.62, F.67, V.69, K.70, H.72, I.75, Y.76 Ligands: SO4.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.30, A:L.30, A:L.33, A:I.37, A:Y.43, A:F.67, A:K.70, A:I.75 Hydrogen bonds: A:L.30 Water bridges: A:H.49, A:K.70, A:K.70, A:K.70 pi-Stacking: A:H.72 Halogen bonds: A:H.72

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: Y.43, E.45, K.46, H.49 Ligands: 20U.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.43, A:E.45, A:K.46 Water bridges: A:D.44, A:Q.47 Salt bridges: A:H.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Discovery of potent and selective spiroindolinone MDM2 inhibitor, RO8994, for cancer therapy. Bioorg.Med.Chem. (2014)

Release Date

2014-07-16

Peptides

E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase Mdm2

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