SMTL ID : 4lx0.1 (1 other biounit)

Crystal structure of Myo5b globular tail domain in complex with active Rab11a

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: S.25, T.43, D.66 Ligands: BEF.2, GDP.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.25, A:T.43, H2O.1, H2O.1

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 8 residues within 4Å: Chain A: S.20, K.24, S.42, T.43, A.68, G.69 Ligands: MG.1, GDP.3 No protein-ligand interaction detected (PLIP)

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 21 residues within 4Å: Chain A: D.19, S.20, G.21, V.22, G.23, K.24, S.25, N.26, F.36, N.37, L.38, S.40, N.124, K.125, D.127, L.128, S.154, A.155, L.156 Ligands: MG.1, BEF.2 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.21, A:V.22, A:G.23, A:K.24, A:S.25, A:N.26, A:N.26, A:N.37, A:S.40, A:N.124, A:K.125, A:K.125, A:A.155, A:L.156 Water bridges: A:S.25, A:L.38, A:T.43, A:Q.70 Salt bridges: A:K.24, A:D.127 pi-Stacking: A:F.36, A:F.36

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: R.74, N.101, R.104, W.105, E.108 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.74, A:R.74, A:W.105, A:E.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pylypenko, O. et al., Structural basis of myosin V Rab GTPase-dependent cargo recognition. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-11-20

Peptides

Ras-related protein Rab-11A: A
Unconventional myosin-Vb: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ras-related protein Rab-11A

Unconventional myosin-Vb

Related Entries With Identical Sequence