SMTL ID : 4lx1.1 (1 other biounit)

Crystal structure of Myo5a globular tail domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: P.367, F.368 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.368 SO4.2: 2 residues within 4Å: Chain A: R.152, N.156 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.156 Water bridges: A:K.359, A:K.359 Salt bridges: A:R.152, A:K.359 SO4.3: 2 residues within 4Å: Chain A: Q.64, R.67 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.64 Salt bridges: A:R.67 SO4.4: 2 residues within 4Å: Chain A: I.389, R.391 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.389, A:R.391 SO4.5: 1 residues within 4Å: Chain A: R.339 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.339, A:Q.342, A:Q.342 Salt bridges: A:R.339 SO4.6: 2 residues within 4Å: Chain A: S.371, S.372 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.372 Water bridges: A:P.370, A:L.373, A:L.373

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 7 residues within 4Å: Chain A: K.296, T.297, D.298, S.334, S.336, F.337, T.340 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.298, A:S.334, A:S.336

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.8: 9 residues within 4Å: Chain A: L.267, L.272, M.273, N.274, S.275, G.276, A.277, K.278, E.279 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.272, A:S.275, A:G.276, A:A.277, A:K.278, A:E.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pylypenko, O. et al., Structural basis of myosin V Rab GTPase-dependent cargo recognition. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-11-20

Peptides

Unconventional myosin-Va: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Unconventional myosin-Va

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