SMTL ID : 4lxg.1

Crystal structure of DxnB2, a carbon - carbon bond hydrolase from Sphingomonas wittichii RW1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: G.33, G.34, G.35, N.104, S.105, L.166, M.229, H.255, W.256 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.34, A:G.35, A:N.104, A:S.105, A:S.105, A:W.256 Water bridges: A:G.33, A:R.180 Salt bridges: A:H.255 SO4.2: 4 residues within 4Å: Chain A: Y.261, P.262, E.263, E.264 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.261, A:E.263, A:E.264 SO4.3: 4 residues within 4Å: Chain A: G.154, S.155, E.156, H.181 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.156 Water bridges: A:S.155, A:E.157 Salt bridges: A:H.181 SO4.4: 9 residues within 4Å: Chain B: G.33, G.34, G.35, N.104, S.105, L.166, M.229, H.255, W.256 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.34, B:G.35, B:N.104, B:S.105, B:S.105, B:W.256 Water bridges: B:G.33, B:R.180 Salt bridges: B:H.255 SO4.5: 4 residues within 4Å: Chain B: Y.261, P.262, E.263, E.264 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.261, B:E.263, B:E.264 SO4.6: 4 residues within 4Å: Chain B: G.154, S.155, E.156, H.181 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.156 Water bridges: B:S.155, B:E.157 Salt bridges: B:H.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruzzini, A.C. et al., The Lid Domain of the MCP Hydrolase DxnB2 Contributes to the Reactivity toward Recalcitrant PCB Metabolites. Biochemistry (2013)

Release Date

2013-09-18

Peptides

MCP Hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

MCP Hydrolase