SMTL ID : 4lxh.1

Crystal Structure of the S105A mutant of a carbon-carbon bond hydrolase, DxnB2 from Sphingomonas wittichii RW1, in complex with 3-Cl HOPDA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

2 x C1E: (2Z,4E)-3-chloro-2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid(Non-covalent)

C1E.1: 13 residues within 4Å: Chain A: G.33, G.34, G.35, A.38, N.43, N.104, A.105, M.106, L.166, L.205, M.229, H.255, W.256 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.205 Hydrogen bonds: A:G.33, A:G.34, A:G.35, A:N.104, A:M.106 Water bridges: A:N.43 C1E.3: 13 residues within 4Å: Chain B: G.33, G.34, G.35, A.38, N.43, N.104, A.105, M.106, L.166, L.205, M.229, H.255, W.256 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.205 Hydrogen bonds: B:G.33, B:G.34, B:G.35, B:N.104, B:M.106 Water bridges: B:N.43

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: A.164, T.167, H.168 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.168 NA.4: 3 residues within 4Å: Chain B: A.164, T.167, H.168 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruzzini, A.C. et al., The Lid Domain of the MCP Hydrolase DxnB2 Contributes to the Reactivity toward Recalcitrant PCB Metabolites. Biochemistry (2013)

Release Date

2013-09-18

Peptides

MCP Hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

MCP Hydrolase

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