SMTL ID : 4lxv.1 (1 other biounit)

Crystal Structure of the Hemagglutinin from a H1N1pdm A/WASHINGTON/5/2011 virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: N.69, E.71, D.91, N.92, C.95, P.142, R.226 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.226 NAG-NAG.2: 7 residues within 4Å: Chain C: N.69, E.71, D.91, N.92, C.95, P.142, R.226 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.226 NAG-NAG.3: 7 residues within 4Å: Chain E: N.69, E.71, D.91, N.92, C.95, P.142, R.226 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.4: 1 residues within 4Å: Chain A: N.16 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.16 NAG.5: 3 residues within 4Å: Chain A: K.48, D.279, N.281 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.48, A:K.48 NAG.6: 3 residues within 4Å: Chain C: G.51, D.279, N.281 No protein-ligand interaction detected (PLIP) NAG.7: 2 residues within 4Å: Chain E: N.28, T.30 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.28, E:T.30 NAG.8: 1 residues within 4Å: Chain E: N.281 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structural Stability of Influenza A(H1N1)pdm09 Virus Hemagglutinins. J.Virol. (2014)

Release Date

2014-02-26

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin

Hemagglutinin

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