SMTL ID : 4ly9.1 (1 other biounit)

Human GKRP complexed to AMG-1694 [(2R)-1,1,1-trifluoro-2-{4-[(2S)-2-{[(3S)-3-methylmorpholin-4-yl]methyl}-4-(thiophen-2-ylsulfonyl)piperazin-1-yl]phenyl}propan-2-ol] and sorbitol-6-phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

12 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: Y.480, F.484, I.485 Ligand excluded by PLIP IOD.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: R.85, G.262 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: A.58, K.330, L.508 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: E.306, T.310 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: R.161, G.163 Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain A: G.15, K.17, R.18 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: C.205, N.208 Ligand excluded by PLIP IOD.9: 4 residues within 4Å: Chain A: Q.541, S.542, R.545, R.593 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain A: S.88, E.89 Ligand excluded by PLIP IOD.11: 2 residues within 4Å: Chain A: K.30, S.34 Ligand excluded by PLIP IOD.12: 2 residues within 4Å: Chain A: L.457, S.470 Ligand excluded by PLIP

1 x S6P: D-SORBITOL-6-PHOSPHATE(Non-covalent)

S6P.13: 15 residues within 4Å: Chain A: G.119, G.120, T.121, S.122, E.162, E.165, S.191, V.192, G.193, A.196, S.269, S.270, R.271, H.363, K.526 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.121, A:T.121, A:T.121, A:S.122, A:S.122, A:E.162, A:V.192, A:G.193, A:A.196, A:S.269, A:S.270, A:R.271, A:K.526 Water bridges: A:S.122, A:S.270, A:T.364 Salt bridges: A:K.526

1 x 1YY: (2R)-1,1,1-trifluoro-2-{4-[(2S)-2-{[(3S)-3-methylmorpholin-4-yl]methyl}-4-(thiophen-2-ylsulfonyl)piperazin-1-yl]phenyl}propan-2-ol(Non-covalent)

1YY.14: 19 residues within 4Å: Chain A: H.21, V.22, I.23, Y.36, V.40, P.41, E.44, K.45, S.46, G.193, M.225, R.227, H.516, K.526, W.529, R.530, A.533, Q.536, R.537 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.40, A:P.41, A:E.44, A:R.227, A:R.227, A:A.533 Hydrogen bonds: A:I.23, A:R.537 Water bridges: A:D.229 Salt bridges: A:E.44

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.15: 6 residues within 4Å: Chain A: G.15, T.16, F.19, K.543, A.544, I.547 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.19, A:K.543

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lloyd, D.J. et al., Antidiabetic effects of glucokinase regulatory protein small-molecule disruptors. Nature (2013)

Release Date

2013-11-20

Peptides

Glucokinase regulatory protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucokinase regulatory protein

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