- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x HB0: trans-4-(hydroxymethyl)cyclohexanol(Non-covalent)
HB0.2: 11 residues within 4Å:- Chain A: V.46, T.55, G.56, C.57, H.113, V.147, E.149, F.198, K.200, V.234, F.254
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:V.46, A:H.113, A:V.147, A:F.198, A:F.198, A:V.234
- Hydrogen bonds: A:T.55, A:E.149
HB0.6: 11 residues within 4Å:- Chain B: V.46, T.55, G.56, C.57, H.113, V.147, E.149, F.198, K.200, V.234, F.254
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:V.46, B:H.113, B:V.147, B:F.198, B:F.198, B:V.234
- Hydrogen bonds: B:T.55, B:T.55
HB0.9: 11 residues within 4Å:- Chain C: V.46, T.55, G.56, C.57, H.113, V.147, E.149, F.198, K.200, V.234, F.254
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:V.46, C:H.113, C:V.147, C:F.198, C:F.198, C:V.234
- Hydrogen bonds: C:T.55
HB0.12: 11 residues within 4Å:- Chain D: V.46, T.55, G.56, C.57, H.113, V.147, E.149, F.198, K.200, V.234, F.254
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:V.46, D:H.113, D:V.147, D:F.198, D:V.234
- Hydrogen bonds: D:T.55, D:T.55
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 9 residues within 4Å:- Chain A: F.181, G.182, A.186, T.187, Y.188
- Chain B: G.182, A.186, T.187, Y.188
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:A.186, A:Y.188, B:Y.188
EDO.4: 7 residues within 4Å:- Chain A: L.150, T.151, P.155, I.156, L.178, Y.185, Y.190
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.156, A:Y.185
EDO.7: 8 residues within 4Å:- Chain B: L.150, T.151, P.155, I.156, L.178, Y.185, A.186, Y.190
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:I.156, B:Y.185
EDO.10: 9 residues within 4Å:- Chain C: F.181, G.182, A.186, T.187, Y.188
- Chain D: G.182, A.186, T.187, Y.188
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:A.186, C:Y.188, D:A.186, D:Y.188
EDO.13: 8 residues within 4Å:- Chain D: L.150, T.151, P.155, I.156, L.178, Y.185, A.186, Y.190
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:I.156, D:Y.185
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sundriyal, A. et al., Inherent Regulation of EAL Domain-catalyzed Hydrolysis of Second Messenger Cyclic di-GMP. J.Biol.Chem. (2014)
- Release Date
- 2014-01-29
- Peptides
- Cyclic di-GMP phosphodiesterase YahA: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x HB0: trans-4-(hydroxymethyl)cyclohexanol(Non-covalent)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sundriyal, A. et al., Inherent Regulation of EAL Domain-catalyzed Hydrolysis of Second Messenger Cyclic di-GMP. J.Biol.Chem. (2014)
- Release Date
- 2014-01-29
- Peptides
- Cyclic di-GMP phosphodiesterase YahA: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D