SMTL ID : 4lz3.1

F95H Epi-isozizaene synthase: Complex with Mg, inorganic pyrophosphate and benzyl triethyl ammonium cation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: L.146, D.147, Y.171, N.179, A.180, A.183 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.147, A:D.147 GOL.2: 6 residues within 4Å: Chain A: Y.84, G.358, M.361, S.364, W.365, Y.373 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.361, A:S.364 GOL.3: 4 residues within 4Å: Chain A: H.185, W.222, R.247 Ligands: PI.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.185 GOL.4: 4 residues within 4Å: Chain A: Q.54, G.341, R.344, N.345 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.54, A:G.341, A:N.345 Water bridges: A:R.344

3 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 5 residues within 4Å: Chain A: D.120, Y.193, E.196 Ligands: MG.6, POP.8 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.120, H2O.10, H2O.10, H2O.10, H2O.10 MG.6: 5 residues within 4Å: Chain A: D.120, K.268, R.359 Ligands: MG.5, POP.8 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.120, H2O.10, H2O.10, H2O.10 MG.7: 5 residues within 4Å: Chain A: R.215, N.261, S.265, E.269 Ligands: POP.8 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.265, A:E.269, H2O.10

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.8: 12 residues within 4Å: Chain A: D.120, R.215, N.261, S.265, K.268, E.269, R.359, Y.360 Ligands: MG.5, MG.6, MG.7, BTM.9 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.261, A:N.261, A:S.265, A:E.269, A:Y.360 Water bridges: A:R.215, A:K.268, A:K.268 Salt bridges: A:R.215, A:K.268, A:R.359

1 x BTM: N-benzyl-N,N-diethylethanaminium(Non-covalent)

BTM.9: 14 residues within 4Å: Chain A: L.93, S.113, H.116, F.117, D.120, Y.193, T.218, F.219, W.224, N.261, F.353, H.354, Y.360 Ligands: POP.8 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.93, A:H.116, A:F.117, A:D.120, A:F.219, A:F.219, A:F.353 pi-Cation interactions: A:H.116, A:F.117

1 x PI: HYDROGENPHOSPHATE ION(Non-covalent)

PI.10: 6 residues within 4Å: Chain A: R.184, H.185, R.241, K.242, R.247 Ligands: GOL.3 10 PLIP interactions: 10 interactions with chain A Water bridges: A:H.185, A:K.242, A:K.242, A:R.247, A:R.247 Salt bridges: A:R.184, A:H.185, A:R.241, A:K.242, A:R.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, R. et al., Reprogramming the Chemodiversity of Terpenoid Cyclization by Remolding the Active Site Contour of epi-Isozizaene Synthase. Biochemistry (2014)

Release Date

2013-12-18

Peptides

Epi-isozizaene synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epi-isozizaene synthase