- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.03 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 4 x K: POTASSIUM ION(Non-covalent)
K.4: 5 residues within 4Å:- Chain A: T.169, K.170, V.172, P.193
- Ligands: EDO.9
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:T.169, A:V.172, A:P.193, H2O.1
K.5: 4 residues within 4Å:- Chain A: D.88, P.89, T.150
- Ligands: URA.10
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.88, A:P.89, H2O.8
K.13: 4 residues within 4Å:- Chain B: T.169, K.170, V.172, P.193
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:T.169, B:V.172, B:P.193, H2O.15, H2O.15
K.17: 3 residues within 4Å:- Chain B: D.88, P.89
- Ligands: URA.15
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.88, H2O.15, H2O.15, H2O.15
- 5 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 5 residues within 4Å:- Chain A: R.187, T.196
- Chain B: R.187, V.194, T.196
Ligand excluded by PLIPCL.7: 4 residues within 4Å:- Chain A: G.179, K.180, Y.200, H.201
Ligand excluded by PLIPCL.8: 3 residues within 4Å:- Chain A: R.81, K.227, A.228
Ligand excluded by PLIPCL.14: 4 residues within 4Å:- Chain B: G.179, K.180, Y.200, H.201
Ligand excluded by PLIPCL.18: 3 residues within 4Å:- Chain B: Y.90, K.107, S.108
Ligand excluded by PLIP- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.9: 8 residues within 4Å:- Chain A: V.172, S.173, P.193, V.194, T.195, D.225
- Ligands: DMS.2, K.4
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:P.193, A:T.195
- Water bridges: A:S.173, A:T.195
EDO.11: 3 residues within 4Å:- Chain A: I.123, D.124, Y.125
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.123, A:Y.125
EDO.12: 3 residues within 4Å:- Chain A: R.118, L.119, G.121
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.119
EDO.19: 2 residues within 4Å:- Chain B: I.123, Y.125
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:I.123
- 2 x URA: URACIL(Non-covalent)
URA.10: 10 residues within 4Å:- Chain A: G.86, I.87, D.88, P.89, Y.90, P.98, F.99, N.140, H.201
- Ligands: K.5
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:I.87, A:D.88, A:F.99, A:N.140, A:N.140, A:H.201
- Water bridges: A:Y.90
- pi-Stacking: A:Y.90, A:F.99
URA.15: 11 residues within 4Å:- Chain B: G.86, I.87, D.88, P.89, Y.90, P.98, F.99, S.108, N.140, H.201
- Ligands: K.17
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:I.87, B:D.88, B:F.99, B:N.140, B:N.140, B:H.201
- Water bridges: B:Y.90
- pi-Stacking: B:Y.90, B:F.99
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schormann, N. et al., Structure of the uracil complex of Vaccinia virus uracil DNA glycosylase. Acta Crystallogr.,Sect.F (2013)
- Release Date
- 2013-12-11
- Peptides
- Uracil-DNA glycosylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.03 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 4 x K: POTASSIUM ION(Non-covalent)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x URA: URACIL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schormann, N. et al., Structure of the uracil complex of Vaccinia virus uracil DNA glycosylase. Acta Crystallogr.,Sect.F (2013)
- Release Date
- 2013-12-11
- Peptides
- Uracil-DNA glycosylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
E