SMTL ID : 4lzg.1

Binary complex of human DNA Polymerase Mu with DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x DC- DG- DG- DC- DA- DT- DA- DC- DG: template strand(Non-covalent)

DC-DG-DG-DC-DA-DT-DA-DC-DG.1: 25 residues within 4Å: Chain A: G.48, L.51, Q.238, F.259, E.260, R.261, K.300, R.304, R.307, R.308, R.311, K.312, L.318, N.319, H.321 Ligands: DC-DG-DT-DA.2, DC-DG-DT-DA.2, DC-DG-DT-DA.2, DC-DG-DT-DA.2, DG-DC-DC-DG.3, DG-DC-DC-DG.3, DG-DC-DC-DG.3, DG-DC-DC-DG.3, GOL.4, CL.8 Protein-ligand interaction information (PLIP) not available

1 x DC- DG- DT- DA: upstream primer strand(Non-covalent)

DC-DG-DT-DA.2: 19 residues within 4Å: Chain A: I.117, F.118, G.119, V.120, G.121, K.123, T.124, Q.149, F.263, R.278, D.280, W.296 Ligands: DC-DG-DG-DC-DA-DT-DA-DC-DG.1, DC-DG-DG-DC-DA-DT-DA-DC-DG.1, DC-DG-DG-DC-DA-DT-DA-DC-DG.1, DC-DG-DG-DC-DA-DT-DA-DC-DG.1, DC-DG-DG-DC-DA-DT-DA-DC-DG.1, GOL.4, NA.6 Protein-ligand interaction information (PLIP) not available

1 x DG- DC- DC- DG: downstream primer strand(Non-covalent)

DG-DC-DC-DG.3: 14 residues within 4Å: Chain A: G.48, R.49, T.52, F.53, P.77, H.78, G.80, E.81, H.82, S.83 Ligands: DC-DG-DG-DC-DA-DT-DA-DC-DG.1, DC-DG-DG-DC-DA-DT-DA-DC-DG.1, DC-DG-DG-DC-DA-DT-DA-DC-DG.1, DC-DG-DG-DC-DA-DT-DA-DC-DG.1 Protein-ligand interaction information (PLIP) not available

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: R.261, G.295, W.296, R.307, S.320 Ligands: DC-DG-DG-DC-DA-DT-DA-DC-DG.1, DC-DG-DT-DA.2, CL.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.295, A:R.307, A:R.307 Water bridges: A:G.295

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: S.46, E.47, G.48, R.49 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain A: R.261, N.319, S.320 Ligands: DC-DG-DG-DC-DA-DT-DA-DC-DG.1, GOL.4 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.6: 4 residues within 4Å: Chain A: T.115, I.117, V.120 Ligands: DC-DG-DT-DA.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.115, A:V.120 NA.7: 1 residues within 4Å: Chain A: F.79 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moon, A.F. et al., Sustained active site rigidity during synthesis by human DNA polymerase mu. Nat.Struct.Mol.Biol. (2014)

Release Date

2014-02-05

Peptides

DNA-directed DNA/RNA polymerase mu: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA-directed DNA/RNA polymerase mu

Related Entries With Identical Sequence