SMTL ID : 4m00.1

Crystal structure of the ligand binding region of staphylococcal adhesion SraP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 7 residues within 4Å: Chain A: D.120, G.138, Y.157, G.266, G.267, A.268 Ligands: MES.5 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:A.139, A:N.159, A:G.266, A:G.267, A:A.268, A:A.268 Water bridges: A:D.120, A:N.137

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.155, Y.157, N.159, D.172 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.155, A:D.155, A:D.172, H2O.1, H2O.1 CA.3: 5 residues within 4Å: Chain A: D.363, K.365, D.391, N.392, D.435 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.363, A:D.363, A:K.365, A:D.391, A:D.391 CA.4: 6 residues within 4Å: Chain A: D.451, T.453, D.480, N.481, D.524, N.528 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.451, A:D.451, A:T.453, A:D.480, A:D.524

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.5: 7 residues within 4Å: Chain A: Y.157, H.158, N.159, T.160, S.161 Ligands: GLC-FRU.1, GLC-FRU.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.158, A:T.160, A:T.160, A:S.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Y.H. et al., Structural Insights into SraP-Mediated Staphylococcus aureus Adhesion to Host Cells. Plos Pathog. (2014)

Release Date

2014-06-18

Peptides

Serine-rich adhesin for platelets: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine-rich adhesin for platelets