SMTL ID : 4m0k.2 (1 other biounit)

Crystal structure of adenine phosphoribosyltransferase from Rhodothermus marinus DSM 4252, NYSGRC Target 029775.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 13 residues within 4Å: Chain A: Q.47, F.48, K.49, D.146, D.147, V.148, I.149, A.150, T.151, G.152, G.153, T.154, L.178 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:Q.47, A:K.49, A:V.148, A:V.148, A:A.150, A:T.151, A:T.151, A:T.151, A:G.152, A:G.153, A:T.154, A:T.154 Water bridges: A:R.86, A:R.86, A:T.151, A:T.151, A:A.155 AMP.3: 13 residues within 4Å: Chain B: Q.47, F.48, K.49, D.146, D.147, V.148, I.149, A.150, T.151, G.152, G.153, T.154, L.178 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:Q.47, B:K.49, B:V.148, B:V.148, B:A.150, B:T.151, B:T.151, B:T.151, B:G.152, B:G.153, B:T.154, B:T.154 Water bridges: B:Q.47, B:R.86, B:R.86, B:R.86, B:T.151, B:T.151, B:A.155

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 1 residues within 4Å: Chain A: E.156 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.156, A:E.156, H2O.2, H2O.3 CA.4: 1 residues within 4Å: Chain B: Q.33 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malashkevich, V.N. et al., Crystal structure of adenine phosphoribosyltransferase from Rhodothermus marinus DSM 4252, NYSGRC Target 029775. To be Published

Release Date

2013-08-14

Peptides

Adenine phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Adenine phosphoribosyltransferase

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