SMTL ID : 4m0u.1

crystal structure of human PRS1 Q133P mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

homo-hexamer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: E.307, S.308, V.309, S.310 Chain C: S.47, R.49 Chain D: R.104 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D, 3 interactions with chain A Salt bridges: C:R.49, D:R.104 Hydrogen bonds: A:V.309, A:S.310, A:S.310 SO4.2: 7 residues within 4Å: Chain A: R.96, A.223, D.224, T.225, C.226, G.227, T.228 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.96, A:D.224, A:T.225, A:C.226, A:G.227, A:T.228 SO4.3: 7 residues within 4Å: Chain B: E.307, S.308, V.309, S.310 Chain E: R.104 Chain F: S.47, R.49 6 PLIP interactions: 3 interactions with chain B, 1 interactions with chain E, 2 interactions with chain F Hydrogen bonds: B:S.308, B:V.309, B:S.310, F:S.47 Salt bridges: E:R.104, F:R.49 SO4.4: 7 residues within 4Å: Chain B: A.223, D.224, T.225, C.226, G.227, T.228, I.229 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.224, B:T.225, B:C.226, B:G.227, B:T.228, B:T.228, B:I.229 SO4.5: 7 residues within 4Å: Chain C: E.307, S.308, V.309, S.310 Chain E: S.47, R.49 Chain F: R.104 5 PLIP interactions: 3 interactions with chain C, 1 interactions with chain E, 1 interactions with chain F Hydrogen bonds: C:V.309, C:S.310, C:S.310 Salt bridges: E:R.49, F:R.104 SO4.6: 7 residues within 4Å: Chain C: R.96, A.223, D.224, T.225, C.226, G.227, T.228 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:R.96, C:D.224, C:T.225, C:C.226, C:G.227, C:T.228 SO4.7: 7 residues within 4Å: Chain A: R.104 Chain B: S.47, R.49 Chain D: E.307, S.308, V.309, S.310 6 PLIP interactions: 3 interactions with chain D, 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: D:S.308, D:V.309, D:S.310, B:S.47 Salt bridges: A:R.104, B:R.49 SO4.8: 7 residues within 4Å: Chain D: A.223, D.224, T.225, C.226, G.227, T.228, I.229 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:D.224, D:T.225, D:C.226, D:G.227, D:T.228, D:T.228, D:I.229 SO4.9: 7 residues within 4Å: Chain A: S.47, R.49 Chain B: R.104 Chain E: E.307, S.308, V.309, S.310 5 PLIP interactions: 3 interactions with chain E, 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: E:V.309, E:S.310, E:S.310 Salt bridges: B:R.104, A:R.49 SO4.10: 7 residues within 4Å: Chain E: R.96, A.223, D.224, T.225, C.226, G.227, T.228 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:R.96, E:D.224, E:T.225, E:C.226, E:G.227, E:T.228 SO4.11: 7 residues within 4Å: Chain C: R.104 Chain D: S.47, R.49 Chain F: E.307, S.308, V.309, S.310 6 PLIP interactions: 3 interactions with chain F, 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: F:S.308, F:V.309, F:S.310, D:S.47 Salt bridges: D:R.49, C:R.104 SO4.12: 7 residues within 4Å: Chain F: A.223, D.224, T.225, C.226, G.227, T.228, I.229 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:D.224, F:T.225, F:C.226, F:G.227, F:T.228, F:T.228, F:I.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, P. et al., Crystal and EM Structures of Human Phosphoribosyl Pyrophosphate Synthase I (PRS1) Provide Novel Insights into the Disease-Associated Mutations. Plos One (2015)

Release Date

2015-02-04

Peptides

Ribose-phosphate pyrophosphokinase 1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Ribose-phosphate pyrophosphokinase 1