- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 6 x ADE: ADENINE(Non-covalent)
ADE.2: 12 residues within 4Å:- Chain A: A.136, A.137, G.138, L.215, E.216, Y.221, V.232, G.233, M.234, T.257, D.258, C.260
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.136, A:Y.221, A:D.258
ADE.5: 12 residues within 4Å:- Chain B: A.136, A.137, G.138, L.215, E.216, Y.221, V.232, G.233, M.234, T.257, D.258, C.260
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:A.136, B:G.138, B:Y.221, B:D.258
- Water bridges: B:D.258
ADE.8: 12 residues within 4Å:- Chain C: A.136, A.137, G.138, L.215, E.216, Y.221, V.232, G.233, M.234, T.257, D.258, C.260
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:A.136, C:D.258
- Water bridges: C:D.258
ADE.11: 12 residues within 4Å:- Chain D: A.136, A.137, G.138, L.215, E.216, Y.221, V.232, G.233, M.234, T.257, D.258, C.260
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:A.136, D:G.138, D:T.257, D:D.258
- Water bridges: D:Y.221
ADE.15: 12 residues within 4Å:- Chain E: A.136, A.137, G.138, L.215, E.216, Y.221, V.232, G.233, M.234, T.257, D.258, C.260
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:A.136, E:Y.221, E:T.257, E:D.258
ADE.17: 12 residues within 4Å:- Chain F: A.136, A.137, G.138, L.215, E.216, Y.221, V.232, G.233, M.234, T.257, D.258, C.260
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:A.136, F:G.138, F:T.257, F:D.258
- 6 x 6PC: PYRIDINE-2-CARBOXYLIC ACID(Non-covalent)
6PC.3: 9 residues within 4Å:- Chain A: R.192, P.203, K.204
- Chain F: N.141, Q.143, L.144, H.201, P.203
- Ligands: 6PC.18
7 PLIP interactions:5 interactions with chain F, 2 interactions with chain A- Hydrophobic interactions: F:Q.143, F:L.144, F:P.203
- Water bridges: F:H.201
- Salt bridges: F:H.201, A:R.192
- Hydrogen bonds: A:K.204
6PC.6: 9 residues within 4Å:- Chain B: R.192, P.203, K.204
- Chain D: N.141, Q.143, L.144, H.201, P.203
- Ligands: 6PC.12
8 PLIP interactions:4 interactions with chain D, 4 interactions with chain B- Hydrophobic interactions: D:Q.143, D:L.144, D:P.203
- Salt bridges: D:H.201, B:R.192, B:K.204
- Hydrogen bonds: B:K.204, B:K.204
6PC.9: 9 residues within 4Å:- Chain C: N.141, Q.143, L.144, H.201, P.203
- Chain E: R.192, P.203, K.204
- Ligands: 6PC.13
7 PLIP interactions:5 interactions with chain C, 2 interactions with chain E- Hydrophobic interactions: C:Q.143, C:L.144, C:P.203
- Water bridges: C:H.201
- Salt bridges: C:H.201, E:R.192
- Hydrogen bonds: E:K.204
6PC.12: 9 residues within 4Å:- Chain B: N.141, Q.143, L.144, H.201, P.203
- Chain D: R.192, P.203, K.204
- Ligands: 6PC.6
7 PLIP interactions:2 interactions with chain D, 5 interactions with chain B- Hydrogen bonds: D:K.204
- Salt bridges: D:R.192, B:H.201
- Hydrophobic interactions: B:Q.143, B:L.144, B:P.203
- Water bridges: B:H.201
6PC.13: 9 residues within 4Å:- Chain C: R.192, P.203, K.204
- Chain E: N.141, Q.143, L.144, H.201, P.203
- Ligands: 6PC.9
6 PLIP interactions:3 interactions with chain E, 3 interactions with chain C- Hydrophobic interactions: E:L.144, E:P.203
- Salt bridges: E:H.201, C:R.192
- Hydrogen bonds: C:K.204, C:K.204
6PC.18: 9 residues within 4Å:- Chain A: N.141, Q.143, L.144, H.201, P.203
- Chain F: R.192, P.203, K.204
- Ligands: 6PC.3
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain F- Hydrophobic interactions: A:Q.143, A:L.144, A:P.203
- Water bridges: A:H.201
- Salt bridges: A:H.201, F:R.192
- Hydrogen bonds: F:K.204
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malashkevich, V.N. et al., Crystal structure of purine nucleoside phosphorylase I from Planctomyces limnophilus DSM 3776, NYSGRC Target 029364. To be Published
- Release Date
- 2013-08-21
- Peptides
- Purine nucleoside phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
EE
DF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 6 x ADE: ADENINE(Non-covalent)
- 6 x 6PC: PYRIDINE-2-CARBOXYLIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malashkevich, V.N. et al., Crystal structure of purine nucleoside phosphorylase I from Planctomyces limnophilus DSM 3776, NYSGRC Target 029364. To be Published
- Release Date
- 2013-08-21
- Peptides
- Purine nucleoside phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
EE
DF
F