SMTL ID : 4m3l.1

Crystal Structure of the coiled coil domain of MuRF1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 3 residues within 4Å: Chain A: K.14, L.17 Ligands: GOL.9 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.17

11 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: E.33, Q.37 Chain B: Y.39 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.37, B:Y.39, B:Y.39 GOL.3: 3 residues within 4Å: Chain A: Y.7, L.10, D.11 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.11 Water bridges: A:Y.7, A:Y.7 GOL.6: 3 residues within 4Å: Chain B: E.33, A.34, Q.37 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.33 GOL.7: 2 residues within 4Å: Chain B: K.14, L.17 No protein-ligand interaction detected (PLIP) GOL.9: 3 residues within 4Å: Chain A: I.21 Chain B: E.33 Ligands: MPD.1 No protein-ligand interaction detected (PLIP) GOL.10: 2 residues within 4Å: Chain B: E.26, E.33 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.33 GOL.13: 1 residues within 4Å: Chain C: E.16 2 PLIP interactions: 2 interactions with chain C Water bridges: C:E.12, C:E.16 GOL.14: 4 residues within 4Å: Chain C: Q.23, E.26, E.27, S.30 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.30, C:S.30 GOL.15: 4 residues within 4Å: Chain B: K.45, L.49 Chain C: T.52, S.56 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.52, C:S.56, C:S.56 GOL.18: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.20: 4 residues within 4Å: Chain D: F.31, A.34, L.35, Q.38 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:A.34

9 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 3 residues within 4Å: Chain A: S.30, A.34, Q.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.37 ACT.5: 1 residues within 4Å: Chain A: E.27 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.27 ACT.8: 2 residues within 4Å: Chain B: K.14, L.17 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.17 ACT.11: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.12, B:E.12 ACT.12: 2 residues within 4Å: Chain B: R.20, E.24 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:R.20 Salt bridges: B:R.20 ACT.16: 1 residues within 4Å: Chain C: R.20 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.20 ACT.17: 1 residues within 4Å: Chain C: L.17 No protein-ligand interaction detected (PLIP) ACT.19: 2 residues within 4Å: Chain C: R.20, E.24 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.20 ACT.21: 2 residues within 4Å: Chain D: L.10, K.14 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Franke, B. et al., Molecular basis for the fold organization and sarcomeric targeting of the muscle atrogin MuRF1. Open Biol (2014)

Release Date

2014-03-26

Peptides

E3 ubiquitin-protein ligase TRIM63: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

E3 ubiquitin-protein ligase TRIM63