SMTL ID : 4m40.1

Crystal structure of hemagglutinin of influenza virus B/Yamanashi/166/1998

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.54 Å

Oligo State

hetero-3-3-mer

Ligands

9 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: S.12, P.13, V.15, N.25, Y.336 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain A: E.291, N.303 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain A: I.30, N.332 Chain B: W.21, Q.42, I.45 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.45 NAG-NAG.4: 5 residues within 4Å: Chain C: S.12, P.13, V.15, N.25, Y.336 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 2 residues within 4Å: Chain C: E.291, N.303 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:E.291 Hydrogen bonds: C:E.291 NAG-NAG.6: 4 residues within 4Å: Chain C: I.30, N.332 Chain D: W.21, I.45 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 5 residues within 4Å: Chain E: S.12, P.13, V.15, N.25, Y.336 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 2 residues within 4Å: Chain E: E.291, N.303 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 4 residues within 4Å: Chain E: I.30, N.332 Chain F: W.21, I.45 No protein-ligand interaction detected (PLIP)

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 3 residues within 4Å: Chain A: N.145, T.147, S.150 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.147 Hydrogen bonds: A:N.145, A:T.147 NAG.11: 1 residues within 4Å: Chain A: N.165 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.165 NAG.12: 2 residues within 4Å: Chain A: N.59, M.71 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.59 NAG.13: 2 residues within 4Å: Chain B: N.145, T.147 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.147, B:T.147 NAG.14: 3 residues within 4Å: Chain C: N.145, T.147, S.150 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.145 NAG.15: 1 residues within 4Å: Chain C: N.165 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.165, C:T.167 NAG.16: 1 residues within 4Å: Chain C: N.59 No protein-ligand interaction detected (PLIP) NAG.17: 2 residues within 4Å: Chain D: N.145, T.147 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.145, D:T.147, D:T.147 NAG.18: 5 residues within 4Å: Chain E: N.145, T.147, S.148, S.150, G.151 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:S.150 NAG.19: 2 residues within 4Å: Chain E: N.165, T.167 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.165 NAG.20: 1 residues within 4Å: Chain E: N.59 No protein-ligand interaction detected (PLIP) NAG.21: 2 residues within 4Å: Chain F: N.145, T.147 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:T.147, F:T.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, F. et al., Structural basis for the divergent evolution of influenza B virus hemagglutinin. Virology (2013)

Release Date

2013-09-25

Peptides

Hemagglutinin HA1: ACE
Hemagglutinin HA2: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin HA1

Hemagglutinin HA2

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