SMTL ID : 4m4d.2 (1 other biounit)

Crystal structure of lipopolysaccharide binding protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.91 Å

Oligo State

monomer

Ligands

1 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PC1.1: 24 residues within 4Å: Chain A: I.13, G.17, A.21, E.24, G.25, A.28, L.29, R.31, L.82, L.121, S.183, D.187, L.188, Y.191, L.192, L.195, V.256, P.430, L.431, H.434, V.455, Y.457, R.459, V.460 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.13, A:E.24, A:A.28, A:L.29, A:L.82, A:L.121, A:D.187, A:Y.191, A:L.195, A:V.256, A:L.431, A:Y.457, A:Y.457 Hydrogen bonds: A:Y.457 Salt bridges: A:R.31, A:R.459

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Non-functional Binders)(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.279, T.321 Ligands: NAG.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.279, A:T.321 NAG.3: 1 residues within 4Å: Ligands: NAG.2 No protein-ligand interaction detected (PLIP) NAG.4: 4 residues within 4Å: Chain A: V.330, N.334, S.369, H.382 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.334, A:H.382 NAG.5: 5 residues within 4Å: Chain A: N.373, N.374, A.424, Q.425 Ligands: NAG.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.373, A:N.373, A:N.374, A:Q.425 NAG.6: 1 residues within 4Å: Ligands: NAG.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eckert, J.K. et al., The crystal structure of lipopolysaccharide binding protein reveals the location of a frequent mutation that impairs innate immunity. Immunity (2013)

Release Date

2013-10-30

Peptides

Lipopolysaccharide-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Lipopolysaccharide-binding protein

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