SMTL ID : 4m4y.1

Crystal structure of a 2009 H1N1 influenza virus hemagglutinin with a stabilization mutation HA2 E47G

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-3-3-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN.1: 1 residues within 4Å: Chain B: N.27 No protein-ligand interaction detected (PLIP)

1 x NAG- FUL- NAG: beta-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUL-NAG.2: 1 residues within 4Å: Chain C: N.15 No protein-ligand interaction detected (PLIP)

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 7 residues within 4Å: Chain A: N.68, E.70, D.90, N.91, C.94, P.141, R.225 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:E.70 Hydrogen bonds: A:N.68, A:D.90, A:N.91, A:R.225, A:R.225 NAG.4: 3 residues within 4Å: Chain A: G.50, D.278, N.280 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.280 Water bridges: A:N.280 NAG.5: 1 residues within 4Å: Chain A: N.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.15 NAG.6: 7 residues within 4Å: Chain B: N.68, E.70, D.90, N.91, C.94, P.141, R.225 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:E.70 Hydrogen bonds: B:N.68, B:N.91, B:R.225, B:R.225 NAG.7: 4 residues within 4Å: Chain B: G.50, D.278, C.279, N.280 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.278, B:D.278, B:N.280 NAG.8: 1 residues within 4Å: Chain B: N.15 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.15 NAG.9: 7 residues within 4Å: Chain C: N.68, E.70, D.90, N.91, C.94, P.141, R.225 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:E.70 Hydrogen bonds: C:N.68, C:N.91, C:R.225, C:R.225 Water bridges: C:G.92 NAG.10: 3 residues within 4Å: Chain C: G.50, D.278, N.280 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.280 Water bridges: C:N.280

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hong, M. et al., Antibody Recognition of the Pandemic H1N1 Influenza Virus Hemagglutinin Receptor Binding Site. J.Virol. (2013)

Release Date

2013-09-25

Peptides

Hemagglutinin HA1 subunit: ABC
Hemagglutinin HA2 subunit: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

D
B

E
D

F
F

Hemagglutinin HA1 subunit

Hemagglutinin HA2 subunit

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